Genetic Divergence of Cultivated Rice Varieties in North Vietnam for Grain Quality Traits Using D2 Cluster Analysis

Date Received: Oct 21, 2021

Date Published: Jun 27, 2022

DOI: https://doi.org/10.31817/vjas.2022.5.2.01

Views

1520

Download

436

How to Cite:

Thang, N. (2022). Genetic Divergence of Cultivated Rice Varieties in North Vietnam for Grain Quality Traits Using D2 Cluster Analysis. Vietnam Journal of Agricultural Sciences, 5(2), 1435–1444. https://doi.org/10.31817/vjas.2022.5.2.01

Genetic Divergence of Cultivated Rice Varieties in North Vietnam for Grain Quality Traits Using D2 Cluster Analysis

Nguyen Ba Thang (*) 1

  • Corresponding author: nbthang@sina.com
  • 1 Independent researcher, Yen So, Hoai Duc, Hanoi 143100, Vietnam

    • Keywords

    Rice, genetic divergence, quality, cluster, Mahalanobis

    Abstract


    The study was carried out with twenty-four genotypes of rice during the Spring season, 2020 in Hanoi, Vietnam in order to exploit the attributes and divergence of quality properties from existing rice cultivars in North Vietnam. The rice genotypes were characterized based on ten quality parameters of milling, physical appearance and physiochemical characters using Mahalanobis D2 statistic. D2 analysis allocated the 24 genotypes into eight clusters, of which cluster I was the largest with 12 genotypes. The clustering showed the random distribution of genotypes into different clusters indicating that the origin and release duration were not related to the genetic diversity of grain quality. Among different traits, amylose content, length/width ratio and gel consistency were identified as topmost contributors in total divergence. Cluster I possessed a maximum intra-cluster value of 296.34 and the maximum inter-cluster distance was recorded between cluster IV and VI (2247.39) succeeded by cluster I and VI (2245.94) designing the members presented in these clusters can be exploited as potential donors in a breeding program to result good physicochemical quality traits in rice.

    References

    Al-Ballat I. A. & Al-Araby A. A. (2019). Characterization, genetic diversity and clustering of common bean accession based on seed yield and related traits. Egyptian Journal of Horticulture. 46(2): 195-213. DOI: 10.21608/ejoh.2019.14116.110.

    Ali T., Singh M. K., Bharadwaj D. N. & Singh L. (2017) Analysis of Genetic Divergence in Wheat (Triticum aestivum L.). Environment and Ecology. 35(3B): 2081-2083.

    Anacleto R., Cuevas R. P., Jimenez R., Llorente C., Nissila E., Henry R. & Sreenivasulu N. (2015). Prospects of breeding high-quality rice using post-genomic tools. Theoretical Applied Genetics. 128: 1449-1466. DOI: 10.1007/s00122-015-2537-6.

    Asante M. D. (2017). Breeding rice for improved grain quality, in Advances in international rice research. Edited by Li J. Q., IntechOpen, Rijeka, Croatia. DOI: 10.5772/66684.

    Bettman J. R., Luce M. F., Payne J. W., Abdullah A., Shoichi I., Adhana K., Dever J., Tuong D. M., Hai L. T. & Schmeiser J. (2014). Vietnam: grain and feed annual. Omonrice. 1960: 463-465.

    Binodh A. K., Kalaiyarasi R. & Thiyagarajan K. (2010). Genetic divergence of rice genotypes and hybrids for quality traits. Oryza. 47(2): 91-95.

    Biswas S. K., Banu B., Kabir K. A., Begum F. & Chaudhary N. H. (1992). Physico-chemical properties of modern and local rice varieties Bangladesh. Bangladesh Rice Journal. 3: 128-131.

    Brown J., Caligari P. D. S. & Campos H. A. (2014). Plant Breeding (2nd ed.). Wiley Blackwell: Oxford, UK.

    Chu H. L., Nguyen. T. A. & Chu H. M. (2011). The diversity of some local upland rice cultivars in northern Vietnam, International Conference on Life Science and Technology IPCBEE. 3: 188-192.

    Cruz N. D. & Khush G. S. (2000). Rice grain quality evaluation procedures. In: Sing R. K., Sing U. S. & Khush G. S. (Eds.). Aromatic rices. Oxford and IBH Publishing Co. Pvt. Ltd. New Delli, India.

    Cuevas R. P., Pede V. O., McKinley J., Velarde O. & Demont M. (2016). Rice grain quality and consumer preferences: a case study of two rural towns in the Philippines. PloS One. 11(3): 1-17. DOI: doi.org/10.1371/journal.pone.0150345.

    Doan Tri Tue (2016). Results of research, testing and production of early maturing genotype VT-NA6 in Nghe An. Nghe An Magazine of Science and Technology. 9: 1-5 (in Vietnamese).

    Fukuoka S., Alpatyeva N. V., Ebana K., Luu N. T. & Nagamine T. (2003). Analysis of Vietnamese rice germplasm provides an insight into Japonica rice differentiation. Plant Breeding. 122: 497-502.

    General Statistics Office of Vietnam (GSO). 2021. Retrieved from https://www.gso.gov.vn/so-lieu-thong-ke/ on August 20, 2021 (in Vietnamese).

    Gibson J. & Kim B. (2013). Quality, quantity, and nutritional impacts of rice price changes in Vietnam. World Development. 43: 329-340. DOI: 10.1016/j.worlddev.2012.11.008.

    Graham R. (2002). A proposal for IRRI to establish a grain quality and nutrition research center; IRRI: Los Baños, Philippines. Report No. 44.

    Higgins J., Santos B., Khanh T. D., Trung K. H., Duong T. D., Doai N. T. P., Khoa N. T., Ha D. T. T, Diep N. T., Dung K. T., Phi C. N., Thuy T. T., Tuan N. T., Tran H. D., Trung N. T., Giang H. T., Nhung T. K., Tran D. C., Lang V. S., Nghia L. T., Giang N. V., Xuan T. D., Hall A., Dyer S., Ham L. H., Caccamo M. & De Vega J. (2021). Resequencing of 672 Native Rice Accessions to Explore Genetic Diversity and Trait Associations in Vietnam. Rice. 14: 52. DOI: 10.1186/s12284-021-00481-0.

    Hoai T. T., Nishi A. & Satoh H. (2008). Diversity of granule bound starch synthesis (GBSS) levels in North Vietnam local rice cultivars. Rice Genetics Newsletter. 24: 62-64.

    International Rice Research Institute (IRRI) (1996). Standard evaluation system for rice. IRRI Los Banos Philippines.

    Jain S., Chacharia M., Singh J., Srivastava S. C. & Tomar S. S. (2016). Genetic Diversity in Soybean [Glycine max (L.) Merrill]. Environment & Ecology. 34(1A): 285-287.

    Jang E. H., Lee S. J., Hong J. Y., Chung H. J., Lee Y. T., Kang B. S. & Lim S. T. (2016). Correlation between physicochemical properties of japonica and indica rice starches. LWT Food Science and Technology. 66: 530-537.

    Juliano B. O. & Gonzales L. A. (1989). Physiochemical and economic aspect of rice grain quality. Progress in Irrigated Rice Research. International Rice Research Institute (IRRI): 1-16.

    Juliano B. O., Perez C. M., Blakeney A. B., Castillo T., Kongseree N., Laignelet B., Lapis E. T., Murty V. V. S. Paule C. M. & Webb B. D. (1981). International cooperative testing on the amylose content of milled rice. Starch-Stärke. 33(5): 157-162.

    Keyser J., Jaffee S. & Nguyen T. (2013). The Financial and economic competitiveness of rice and selected feed crops in Northern and Southern Vietnam, World Bank. Hanoi.

    Khanh T. D., Duong V. X., Nguyen P. C., Xuan T. D., Trung N. T., Trung K. H., Gioi D. H., Hoang N. H., Tran H. D., Trung D. M. & Huong B. T. T. (2021). Rice Breeding in Vietnam: Retrospects, Challenges and Prospects. Agriculture. 11(397): 1-21. DOI: 10.3390/agriculture11050397.

    Khush G S., Paule C. M. & de la Cruz N. M. (1979). Rice grain quality evaluation and improvement at IRRI. In: Proceedings of Workshop on Chemical Aspects of Rice Grain Quality. Los Baños (Philippines): International Rice Research Institute.

    Lu Z. H., Sasaki T., Li Y. Y., Yoshihashi T., Li L. T. & Kohyama K. (2009). Effect of amylose content and rice type on dynamic viscoelasticity of a composite rice starch gel. Food Hydrocolloid. 23: 1712-1719.

    Le M. T., Arie T. & Teraoka T. (2010). Population dynamics and pathogenic races of rice blast fungus, Magnaporthe oryzae in the Mekong Delta in Vietnam. Journal of General Plant Pathology. 76: 177-182.

    Mohanty N., Sekhar M. R., Reddy M. D. & Sudhakar P. (2010). Genetic divergence studies in rice genotype. Oryza. 10(4): 269-271.

    Nguyen L. H., Truong T. T. T. & Nguyen T. T. (2019). Trends in food and rice eaten away from home in Vietnam. World Food Policy. 5(1): 35-51. DOI: 10.1002/wfp2.12003.

    Nguyen T. K. T., Tran A. N., Tran T. T. X., Vo T. T., Tran A. T., Tran T. T., Tran B. T., Nguyen K. T., Nguyen K. N. & Tran N. T. (2018). Characterization of novel high quality rice germplasm and molecular markers associated with aroma and amylose content. Journal of Vietnam Agricultural Science and Technology. 1(3): 3-12.

    Nguyen T. N. L, Nguyen V. T. T, Chu H. M. & Nguyen N. K. (2010). Genetic diversity analysis of local upland rice cultivars (Oryza sativa L.) from North provinces of Vietnam. Academia Journal of Biology. 32(1): 67-73 (in Vietnamese with English abstract).

    Nguyen Thanh Tuong, Nguyen Bao Ve & Vo Cong Thanh (2005). Evaluation of grain quality of 55 rice genotypes growing in the coastal areas of Ben Tre, Long An, Tien Giang and Tra Vinh provinces. Cantho University Journal of Science. 3: 33-39 (in Vietnamese with English abstract).

    Nguyen T. T. T., Nguyen N. M. T., Hoang L. H., Furya N. & Tuschiya K. (2012). Genetic diversity in Vietnamese upland rice germplasm revealed by SSR markers. Journal of the Faculty of Agriculture, Kyushu University. 57(2): 383-391.

    Pang Y., Ali J., Wang X., Franje N. J., Revilleza J. E., Xu J. & Li Z. (2016). Relationship of rice grain amylose, gelatinization temperature and pasting properties for breeding better eating and cooking quality of rice varieties. PLoS One. 11(12): e0168483. DOI: 10.1371/journal.pone.0168483.

    Rahaman M., Acharya B., Shukla S. N. & Pande K. (1997). Genetic divergence in lowland rice germplasm. Oryza. 34(3): 209-212.

    Rao P. V., Muralidharan K. & Siddiq E. A. (2017). Modern Breeding Strategies For Crop Improvement. Proceedings of One-day Dialogue on July 10, 2017, Professor Jayashankar Telangana State Agricultural University (PJTSAU), Rajendranagar, Hyderabad 500 030, India.

    Rao R. C. (1952). Advanced statistical methods in biometric research. New York: John Wiley and Sons.

    Rohilla R., Singh V. P., Singh U. S., Singh R. K. & Khush G. S. (2000). Crop husbandry and environmental factors affecting aroma and other quality traits. 201-216. In: Singh R. K., Singh U. S. & Khush G. S. (Eds). Aromatic Rices. Oxford and IBH Publishing Co (Pvt) Ltd. New Delhi, India.

    Sattari A., Mahdinezhad N., Fakheri B., Noroozi M. & Beheshtizadeh H. (2015). Improvement of the eating and cooking qualities of rice: a review. International Journal of Farming and Allied Sciences. 4: 153-160.

    Singh D. (1981). The relative importance of characters affecting genetic divergence. Indian Journal Genetics and Plant Breeding. 41: 237-245.

    Song J. M., Arif M., Zhang M., Sze S. H. & Zhang H. B. (2019). Phenotypic and molecular dissection of grain quality using the USDA rice mini-core collection. Food Chemistry. 284: 312-322. DOI: 10.1016/j.foodchem.2019.01.009.

    Subudhi N., Meher J., Dash S. K., Bose L. K., Sarkar S. & Mohapatra S. (2021). Genetic Diversity Studies of Popular Rice Genotypes based on Grain Quality Characters. International Journal of Current Microbiology and Applied Sciences. 10(1): 2974-2980. DOI: 10.20546/ijcmas.2021.1001.344.

    Sun H. & Siebenmorgen T. J. (1993). Milling characteristics of various rough rice kernel thickness fractions. Cereal Chemistry. 70(6): 727-733.

    Szamosi C., Solmaz I., Sari N. & Barsony C. (2010). Morphological evaluation and comparison of Hungarian and Turkish melon (C. melo) germplasm. Scientia Horticulturae. 124(2): 170-182. DOI: 10.1016/j.scienta.2009.12.024.

    Thuy N. T. T., Long N. T., Lieu L. T., Giang H. T., Trung K. H., Xuan T. D., Tran H. D., Hoi P. X., Trung N. T., Tuan N. T., Duong V. X. & Khanh T. D. (2020). Evaluation of genetic diversity of rice blast fungus (Magnaporthe oryzae Barr) isolates collected from South Central coast areas of Vietnam. Chiang Mai Journal of Science. 47: 1102-1117.

    Tomlins K., Manful J., Gayin J., Kudjawu B. & Tamakloe I. (2007). Study of sensory evaluation, consumer acceptability, affordability and market price of rice. Journal of the Science of Food and Agriculture. 87: 1564-1575. DOI: 10.1002/jsfa.2889.

    Tran D. S., Tran T. T. H., Nguyen T. L. H., Ha M. L., Dinh B. Y., Kumamaru T. & Satoh H. (2012). Variation on grain quality in Vietnamese rice cultivars collected from central Vietnam. Journal of the Faculty of Agriculture, Kyushu University. 57(2): 365-371.

    Tran Manh Bao, Tran Thi Hop, Tran Thi Tiec, Nguyen Thi Nhung & Nguyen Van Hoan (2016). Breeding result of rice genotype TBR225. Vietnam Journal of Agricultural Sciences. 14(9): 1360-1367 (in Vietnamese).

    Ullah M. Z., Hassan L., Singha T. & Patwary A. K. (2015). Genetic divergence in tomato lines (Solanum lycopersicum L.). Journal of Bangladesh Agricultural University. 13(1): 61-64. DOI: 10.3329/jbau.v13i1.28715.

    Yatung T., Dubey R. K., Vikas Singh V. & Upadhyay G. (2014). Genetic diversity of chilli (Capsicum annuum L.) genotypes of India based on morpho-chemical traits. Australian Journal of Crop Science. 8(1): 97-102.